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  5. PSME_00025744-RA

PSME_00025744-RA


Description : (at2g45120 : 97.8) C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1); Has 2765 Blast hits to 2574 proteins in 176 species: Archae - 0; Bacteria - 8; Metazoa - 1573; Fungi - 69; Plants - 926; Viruses - 18; Other Eukaryotes - 171 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description)


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025744-RA
Cluster HCCA clusters: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
A4A49_10804 No alias zinc finger protein zat11 0.03 Orthogroups_2024-Update
At1g27730 No alias Zinc finger protein ZAT10... 0.05 Orthogroups_2024-Update
At2g26940 No alias C2H2-type zinc finger family protein... 0.02 Orthogroups_2024-Update
At3g49930 No alias At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24] 0.02 Orthogroups_2024-Update
Bradi5g00530 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Brara.D01719.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G061626 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
GRMZM2G113860 No alias zinc-finger protein 2 0.04 Orthogroups_2024-Update
GRMZM2G140033 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
GRMZM2G402027 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Glyma.04G044900 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Glyma.10G045400 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G112930.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
LOC_Os05g38620 No alias ZOS5-10 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
MA_109421g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_30401g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.03 Orthogroups_2024-Update
Potri.001G235800 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G119300 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Potri.010G209400 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G017300 No alias salt tolerance zinc finger 0.02 Orthogroups_2024-Update
Seita.8G247200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G357600.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Solyc05g054650 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.02 Orthogroups_2024-Update
Solyc06g060480 No alias Zinc finger family protein (AHRD V3.3 *** B9HPY6_POPTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!