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  5. PSME_00025745-RA

PSME_00025745-RA


Description : (at2g45120 : 107.0) C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT3G60580.1); Has 2765 Blast hits to 2574 proteins in 176 species: Archae - 0; Bacteria - 8; Metazoa - 1573; Fungi - 69; Plants - 926; Viruses - 18; Other Eukaryotes - 171 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025745-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AF546187.1_FG012 No alias C2H2 and C2HC zinc fingers superfamily protein 0.04 Orthogroups_2024-Update
At1g27730 No alias Zinc finger protein ZAT10... 0.02 Orthogroups_2024-Update
At3g10470 No alias C2H2-type zinc finger family protein... 0.03 Orthogroups_2024-Update
At4g35280 No alias DAZ2 [Source:UniProtKB/TrEMBL;Acc:A0A178UTT4] 0.03 Orthogroups_2024-Update
At5g04390 No alias C2H2-type zinc finger family protein... 0.04 Orthogroups_2024-Update
Brara.B01067.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.H02034.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.J01350.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G035103 No alias salt tolerance zinc finger 0.02 Orthogroups_2024-Update
GRMZM2G361210 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Glyma.06G045400 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Glyma.17G236200 No alias salt tolerance zinc finger 0.05 Orthogroups_2024-Update
Glyma.19G174000 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G086790.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G097500.3 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g66570 No alias ZOS1-19 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g33540 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os04g46670 No alias ZOS4-09 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
MA_101494g0010 No alias (at1g02040 : 99.8) C2H2-type zinc finger family protein;... 0.02 Orthogroups_2024-Update
MA_109421g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.03 Orthogroups_2024-Update
PSME_00025743-RA No alias (at3g60580 : 103.0) C2H2-like zinc finger protein;... 0.04 Orthogroups_2024-Update
PSME_00056418-RA No alias (at1g02040 : 111.0) C2H2-type zinc finger family... 0.02 Orthogroups_2024-Update
Potri.002G119300 No alias salt tolerance zinc finger 0.02 Orthogroups_2024-Update
Potri.008G032300 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Seita.3G062700.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Seita.8G248000.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Seita.9G357400.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G035000.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Solyc04g077980 No alias C2H2-type zinc finger protein 0.03 Orthogroups_2024-Update
Solyc05g054660 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.06 Orthogroups_2024-Update
Sopen04g031570 No alias C2H2-type zinc finger 0.03 Orthogroups_2024-Update
Sopen11g003900 No alias C2H2-type zinc finger 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!