1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00025796-RA

PSME_00025796-RA


Description : (at2g17980 : 823.0) member of SLY1 Gene Family; ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G31740.1); Has 1583 Blast hits to 1569 proteins in 233 species: Archae - 0; Bacteria - 15; Metazoa - 661; Fungi - 409; Plants - 204; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink). & (q851w1|sly1_orysa : 733.0) SEC1-family transport protein SLY1 - Oryza sativa (Rice) & (reliability: 1646.0) & (original description: no original description)


Gene families : OG_42_0005276 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005276_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025796-RA
Cluster HCCA clusters: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Bradi5g24240 No alias Sec1/munc18-like (SM) proteins superfamily 0.02 Orthogroups_2024-Update
HORVU5Hr1G009740.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Pp1s188_85V6 No alias vesicle protein sorting-associated 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006904 vesicle docking involved in exocytosis IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Predicted GO
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR001619 Sec1-like 39 613
No external refs found!