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  5. PSME_00025835-RA

PSME_00025835-RA


Description : (at1g26770 : 394.0) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (q40636|expa2_orysa : 382.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 788.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00025835-RA
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_20002 No alias expansin-a12 0.02 Orthogroups_2024-Update
A4A49_27627 No alias expansin-a4 0.03 Orthogroups_2024-Update
At1g62980 No alias Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07] 0.03 Orthogroups_2024-Update
At5g39260 No alias Expansin-A21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL81] 0.05 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.02 Orthogroups_2024-Update
At5g56320 No alias expansin A14 [Source:TAIR;Acc:AT5G56320] 0.03 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.06 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.E02601.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.F03390.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.K01453.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Glyma.02G248500 No alias expansin A4 0.04 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.03 Orthogroups_2024-Update
Glyma.14G210500 No alias expansin A13 0.04 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
HORVU1Hr1G069830.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
HORVU3Hr1G034030.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
HORVU6Hr1G075970.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g60720 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10434805g0030 No alias (at2g40610 : 365.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_134592g0010 No alias (q40636|expa2_orysa : 350.0) Expansin-A2 precursor... 0.04 Orthogroups_2024-Update
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp1g26350.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00006586-RA No alias (at2g40610 : 328.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.05 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.09 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00051817-RA No alias (at1g20190 : 379.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.05 Orthogroups_2024-Update
Potri.004G080200 No alias expansin A13 0.02 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.05 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.04 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sopen06g017810 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 161 238
IPR009009 RlpA-like_DPBB 65 150
No external refs found!