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  5. PSME_00026226-RA

PSME_00026226-RA


Description : (at3g46790 : 588.0) Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation.; CHLORORESPIRATORY REDUCTION 2 (CRR2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 36401 Blast hits to 13536 proteins in 261 species: Archae - 0; Bacteria - 8; Metazoa - 92; Fungi - 72; Plants - 35786; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). & (q76c99|rf1_orysa : 108.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1176.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026226-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
73641 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_26813 No alias putative pentatricopeptide repeat-containing protein,... 0.02 Orthogroups_2024-Update
At1g03540 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Orthogroups_2024-Update
At1g26900 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.02 Orthogroups_2024-Update
At3g16610 No alias Pentatricopeptide repeat-containing protein At3g16610... 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.03 Orthogroups_2024-Update
GRMZM5G811022 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G174500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G129100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G001700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G084980.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g68490 No alias tetratricopeptide-like helical, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g05560 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10277392g0010 No alias (at4g18750 : 498.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_103380g0010 No alias (at3g24000 : 608.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_105629g0010 No alias (at3g49142 : 670.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_322292g0010 No alias (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_472579g0010 No alias (at4g33170 : 615.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_79624g0010 No alias (at3g25970 : 531.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_95261g0010 No alias (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00010952-RA No alias (at4g21065 : 218.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00020178-RA No alias (at3g03580 : 731.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00024026-RA No alias (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00042901-RA No alias (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G146900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g081900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc08g023640 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g096510 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 529 653
IPR002885 Pentatricopeptide_repeat 126 170
IPR002885 Pentatricopeptide_repeat 255 302
IPR002885 Pentatricopeptide_repeat 356 403
IPR002885 Pentatricopeptide_repeat 224 254
IPR002885 Pentatricopeptide_repeat 330 355
IPR002885 Pentatricopeptide_repeat 431 454
No external refs found!