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  5. PSME_00026246-RA

PSME_00026246-RA


Description : (at1g76160 : 713.0) SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (q00624|aso_brana : 631.0) L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase) - Brassica napus (Rape) & (reliability: 1384.0) & (original description: no original description)


Gene families : OG_42_0000592 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026246-RA
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
410532 No alias SKU5 similar 4 0.03 Orthogroups_2024-Update
A4A49_13772 No alias l-ascorbate oxidase-like protein 0.02 Orthogroups_2024-Update
At1g41830 No alias SKS6 [Source:UniProtKB/TrEMBL;Acc:A0A178W7S3] 0.03 Orthogroups_2024-Update
At4g37160 No alias Sks15 [Source:UniProtKB/TrEMBL;Acc:A0A178UTS2] 0.03 Orthogroups_2024-Update
At4g38420 No alias Putative pectinesterase [Source:UniProtKB/TrEMBL;Acc:Q8VYB3] 0.02 Orthogroups_2024-Update
Bradi1g26470 No alias SKU5 similar 5 0.03 Orthogroups_2024-Update
Brara.G01210.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Glyma.04G019500 No alias SKU5 similar 5 0.02 Orthogroups_2024-Update
Potri.002G021000 No alias SKU5 similar 18 0.02 Orthogroups_2024-Update
Potri.014G154500 No alias SKU5 similar 4 0.03 Orthogroups_2024-Update
Sobic.010G230000.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008146 sulfotransferase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 411 538
IPR001117 Cu-oxidase 184 321
IPR011707 Cu-oxidase_3 58 171
No external refs found!