1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00026301-RA

PSME_00026301-RA


Description : (at4g13340 : 513.0) Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink). & (p93194|rpk1_iponi : 120.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1026.0) & (original description: no original description)


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026301-RA

Target Alias Description ECC score Gene Family Method Actions
At4g13340 No alias Leucine-rich repeat extensin-like protein 3... 0.03 Orthogroups_2024-Update
Brara.H01238.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Potri.006G152800 No alias Leucine-rich repeat (LRR) family protein 0.01 Orthogroups_2024-Update
Seita.1G092900.1 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
Seita.3G105100.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
Seita.3G110000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G050900.2 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 83 115
IPR001611 Leu-rich_rpt 152 208
No external refs found!