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  5. Solyc02g069650

Solyc02g069650


Description : Vacuolar protein sorting-associated protein 54 (AHRD V3.3 *** W9SA63_9ROSA)


Gene families : OG_42_0003381 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003381_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g069650
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G083800 No alias VPS54 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR012501 Vps54_C 286 416
No external refs found!