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  5. PSME_00026625-RA

PSME_00026625-RA


Description : (at1g73570 : 266.0) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 17442 Blast hits to 7119 proteins in 1241 species: Archae - 0; Bacteria - 12464; Metazoa - 575; Fungi - 642; Plants - 369; Viruses - 21; Other Eukaryotes - 3371 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0001382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001382_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026625-RA
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Mp5g11590.1 No alias component HRD3 of ER-associated protein degradation... 0.02 Orthogroups_2024-Update
PSME_00053229-RA No alias (at1g18260 : 192.0) HCP-like superfamily protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR006597 Sel1-like 113 127
IPR006597 Sel1-like 128 162
IPR006597 Sel1-like 247 277
IPR006597 Sel1-like 299 330
No external refs found!