PSME_00026834-RA

Description : (at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink). & (q64ha9|spl11_orysa : 128.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 516.0) & (original description: no original description)

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00026834-RA
Cluster	HCCA clusters: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
At3g52450	No alias	RING-type E3 ubiquitin transferase...	0.03	Orthogroups_2024-Update
GRMZM2G071484	No alias	plant U-box 22	0.03	Orthogroups_2024-Update
Glyma.03G202600	No alias	plant U-box 22	0.04	Orthogroups_2024-Update
Glyma.07G106000	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G077120.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
LOC_Os01g64570	No alias	U-box domain-containing protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os04g35680	No alias	U-box domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g06670	No alias	U-box protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_33190g0010	No alias	(at2g35930 : 324.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
MA_84154g0010	No alias	(at3g19380 : 196.0) plant U-box 25 (PUB25); FUNCTIONS...	0.07	Orthogroups_2024-Update
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Orthogroups_2024-Update
PSME_00043995-RA	No alias	(at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00054803-RA	No alias	(at3g52450 : 283.0) Encodes a cytoplasmically localized...	0.05	Orthogroups_2024-Update
PSME_00056761-RA	No alias	(at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS...	0.02	Orthogroups_2024-Update
Potri.002G070500	No alias	plant U-box 29	0.02	Orthogroups_2024-Update
Pp1s109_251V6	No alias	u-box domain-containing protein	0.03	Orthogroups_2024-Update
Seita.1G186200.1	No alias	Unknown function	0.08	Orthogroups_2024-Update
Seita.7G104100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.001G441100.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G245100.1	No alias	E3 ubiquitin ligase	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0051213	dioxygenase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	17	88

External Links

No external refs found!

PSME_00026834-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation