1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00026859-RA

PSME_00026859-RA


Description : (at1g09560 : 257.0) germin-like protein (GLP5); germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (q9s8p4|rhre_pea : 233.0) Rhicadhesin receptor precursor (Germin-like protein) - Pisum sativum (Garden pea) & (reliability: 514.0) & (original description: no original description)


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00026859-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
At5g39130 No alias Germin-like protein subfamily 1 member 16... 0.01 Orthogroups_2024-Update
At5g39160 No alias Germin-like protein subfamily 1 member 18... 0.03 Orthogroups_2024-Update
Bradi3g15210 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03684.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Glyma.19G059000 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G086200 No alias RmlC-like cupins superfamily protein 0.01 Orthogroups_2024-Update
Glyma.20G220900 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os02g29000 No alias Cupin domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g48750 No alias Cupin domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_579918g0010 No alias (q9s8p4|rhre_pea : 172.0) Rhicadhesin receptor precursor... 0.01 Orthogroups_2024-Update
Mp5g05170.1 No alias Germin-like protein subfamily 3 member 2 OS=Arabidopsis... 0.03 Orthogroups_2024-Update
PSME_00017404-RA No alias (at1g09560 : 254.0) germin-like protein (GLP5);... 0.01 Orthogroups_2024-Update
PSME_00055226-RA No alias (at5g39110 : 131.0) RmlC-like cupins superfamily... 0.03 Orthogroups_2024-Update
PSME_00055631-RA No alias (at4g14630 : 229.0) germin-like protein with N-terminal... 0.05 Orthogroups_2024-Update
Potri.004G179800 No alias RmlC-like cupins superfamily protein 0.01 Orthogroups_2024-Update
Potri.013G051600 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Sobic.001G050100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G136200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G066932.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc01g088280 No alias Germin family protein (AHRD V3.3 *** G7I5N4_MEDTR) 0.03 Orthogroups_2024-Update
Sopen03g041190 No alias Cupin 0.03 Orthogroups_2024-Update
evm.model.contig_2295.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 80 226
No external refs found!