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  5. PSME_00027052-RA

PSME_00027052-RA


Description : (at2g25110 : 306.0) Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.; stromal cell-derived factor 2-like protein precursor (SDF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, defense response to fungus, PAMP-induced immunity; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MIR (InterPro:IPR003608), MIR motif (InterPro:IPR016093); Has 1035 Blast hits to 992 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 512; Plants - 64; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)


Gene families : OG_42_0004556 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004556_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027052-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Bradi3g19740 No alias stromal cell-derived factor 2-like protein precursor 0.05 Orthogroups_2024-Update
Bradi3g36940 No alias stromal cell-derived factor 2-like protein precursor 0.06 Orthogroups_2024-Update
Glyma.04G061900 No alias stromal cell-derived factor 2-like protein precursor 0.02 Orthogroups_2024-Update
HORVU7Hr1G079030.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.03 Orthogroups_2024-Update
Kfl00579_0080 kfl00579_0080_v1.1 (at2g25110 : 199.0) Encodes an endoplasmic reticulum... 0.01 Orthogroups_2024-Update
Potri.018G020700 No alias stromal cell-derived factor 2-like protein precursor 0.05 Orthogroups_2024-Update
Pp1s213_64V6 No alias F13D4.70; MIR domain-containing protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.6G103900.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.05 Orthogroups_2024-Update
Seita.6G162800.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.07 Orthogroups_2024-Update
Sobic.007G117500.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.02 Orthogroups_2024-Update
Sobic.007G140600.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.02 Orthogroups_2024-Update
Solyc03g117020 No alias Stromal cell-derived factor 2-like protein (AHRD V3.3... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR016093 MIR_motif 107 240
No external refs found!