1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00027120-RA

PSME_00027120-RA


Description : (q9lef0|gpx4_mescr : 145.0) Probable phospholipid hydroperoxide glutathione peroxidase (EC 1.11.1.12) (PHGPx) - Mesembryanthemum crystallinum (Common ice plant) & (at4g11600 : 135.0) Encodes glutathione peroxidase.; glutathione peroxidase 6 (GPX6); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, response to metal ion; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 7 (TAIR:AT4G31870.1); Has 7601 Blast hits to 7600 proteins in 1766 species: Archae - 2; Bacteria - 3728; Metazoa - 790; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2480 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027120-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_24985 No alias root phototropism protein 2 0.03 Orthogroups_2024-Update
A4A49_32094 No alias btbpoz domain-containing protein 0.02 Orthogroups_2024-Update
At2g23050 No alias BTB/POZ domain-containing protein NPY4... 0.03 Orthogroups_2024-Update
At4g31820 No alias BTB/POZ domain-containing protein NPY1... 0.03 Orthogroups_2024-Update
Bradi1g70761 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Bradi4g30480 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Brara.F03270.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G01158.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Brara.I00846.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
GRMZM2G033267 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.11G049800 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.17G163500 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G023260.4 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G046340.1 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
LOC_Os02g38120 No alias BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain... 0.02 Orthogroups_2024-Update
PSME_00001436-RA No alias (at1g03010 : 601.0) Phototropic-responsive NPH3 family... 0.03 Orthogroups_2024-Update
PSME_00028520-RA No alias (at5g48130 : 265.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
PSME_00049027-RA No alias (at1g67900 : 575.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
PSME_00049816-RA No alias (at1g67900 : 654.0) Phototropic-responsive NPH3 family... 0.05 Orthogroups_2024-Update
Potri.005G130700 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Potri.007G033900 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Potri.007G112600 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.017G048200 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Potri.018G018600 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Pp1s108_69V6 No alias protein binding 0.02 Orthogroups_2024-Update
Pp1s67_83V6 No alias protein binding 0.02 Orthogroups_2024-Update
Sobic.001G077200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G014900.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Sopen09g023980 No alias NPH3 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004602 glutathione peroxidase activity IEA InterProScan predictions
BP GO:0006979 response to oxidative stress IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000889 Glutathione_peroxidase 45 136
IPR027356 NPH3_dom 200 261
No external refs found!