1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00027124-RA

PSME_00027124-RA


Description : (at4g10780 : 169.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027124-RA
Cluster HCCA clusters: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
At1g63350 No alias Disease resistance protein (CC-NBS-LRR class) family... 0.04 Orthogroups_2024-Update
At4g27220 No alias NB-ARC domain-containing disease resistance protein... 0.03 Orthogroups_2024-Update
Brara.A02495.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.12G236500 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G095140.34 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os09g10054 No alias disease resistance protein RPS2, putative, expressed 0.02 Orthogroups_2024-Update
MA_10059887g0010 No alias (at1g12220 : 207.0) Resistance gene, mediates resistance... 0.04 Orthogroups_2024-Update
MA_10062820g0010 No alias (at1g12280 : 143.0) LRR and NB-ARC domains-containing... 0.05 Orthogroups_2024-Update
MA_133928g0010 No alias (at1g12280 : 252.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_674039g0010 No alias (at5g63020 : 154.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
MA_8869735g0010 No alias (at1g61300 : 128.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00000174-RA No alias (at1g63350 : 147.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00004005-RA No alias (at1g15890 : 219.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00011882-RA No alias (at1g12220 : 145.0) Resistance gene, mediates resistance... 0.01 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
PSME_00027916-RA No alias (at4g27220 : 83.6) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00033120-RA No alias (at1g63350 : 267.0) Disease resistance protein... 0.06 Orthogroups_2024-Update
PSME_00046780-RA No alias (at4g10780 : 218.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00048940-RA No alias (at4g27220 : 141.0) NB-ARC domain-containing disease... 0.03 Orthogroups_2024-Update
PSME_00050940-RA No alias (at1g12280 : 221.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
PSME_00053148-RA No alias (at1g12210 : 218.0) RFL1 has high sequence similarity to... 0.04 Orthogroups_2024-Update
Potri.001G313301 No alias Disease resistance protein (CC-NBS-LRR class) family 0.04 Orthogroups_2024-Update
Potri.T014500 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 Orthogroups_2024-Update
Potri.T014700 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T026420 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T027700 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0043531 ADP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004864 protein phosphatase inhibitor activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019212 phosphatase inhibitor activity IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 168 245
IPR001611 Leu-rich_rpt 396 451
No external refs found!