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  5. PSME_00027287-RA

PSME_00027287-RA


Description : (at4g20140 : 366.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 322.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 662.0) & (original description: no original description)


Gene families : OG_42_0002753 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027287-RA
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
MA_10436129g0010 No alias (at4g13920 : 154.0) receptor like protein 50 (RLP50);... 0.06 Orthogroups_2024-Update
MA_82361g0020 No alias (at3g05660 : 111.0) receptor like protein 33 (RLP33);... 0.14 Orthogroups_2024-Update
MA_827806g0010 No alias (at3g05660 : 132.0) receptor like protein 33 (RLP33);... 0.04 Orthogroups_2024-Update
PSME_00019487-RA No alias (at5g46330 : 298.0) Encodes a leucine-rich repeat... 0.1 Orthogroups_2024-Update
PSME_00033428-RA No alias (at4g20140 : 253.0) Encodes GASSHO1 (GSO1), a putative... 0.05 Orthogroups_2024-Update
PSME_00035252-RA No alias (at3g28890 : 187.0) receptor like protein 43 (RLP43);... 0.06 Orthogroups_2024-Update
PSME_00039642-RA No alias (at5g44700 : 327.0) Encodes GASSHO2 (GSO2), a putative... 0.04 Orthogroups_2024-Update
PSME_00042435-RA No alias (at5g46330 : 350.0) Encodes a leucine-rich repeat... 0.12 Orthogroups_2024-Update
PSME_00043444-RA No alias (at4g08850 : 250.0) Leucine-rich repeat receptor-like... 0.04 Orthogroups_2024-Update
PSME_00043940-RA No alias (at5g46330 : 333.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
PSME_00047737-RA No alias (at1g35710 : 324.0) Protein kinase family protein with... 0.07 Orthogroups_2024-Update
PSME_00049138-RA No alias (at4g20140 : 429.0) Encodes GASSHO1 (GSO1), a putative... 0.06 Orthogroups_2024-Update
PSME_00049161-RA No alias (at4g20140 : 363.0) Encodes GASSHO1 (GSO1), a putative... 0.03 Orthogroups_2024-Update
PSME_00052365-RA No alias (at3g24240 : 207.0) Leucine-rich repeat receptor-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 1007 1049
IPR013210 LRR_N_plant-typ 82 124
IPR001611 Leu-rich_rpt 530 589
IPR001611 Leu-rich_rpt 1274 1333
IPR001611 Leu-rich_rpt 386 445
IPR001611 Leu-rich_rpt 268 325
IPR001611 Leu-rich_rpt 1174 1227
IPR001611 Leu-rich_rpt 1418 1477
IPR001611 Leu-rich_rpt 1545 1565
IPR001611 Leu-rich_rpt 657 677
IPR001611 Leu-rich_rpt 1570 1591
No external refs found!