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  5. PSME_00027353-RA

PSME_00027353-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000723 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027353-RA
Cluster HCCA clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g31660 No alias VQ domain containing protein, putative, expressed 0.04 Orthogroups_2024-Update
Sobic.010G221032.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR008889 VQ 168 194
No external refs found!