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  5. PSME_00027375-RA

PSME_00027375-RA


Description : (at3g26140 : 412.0) Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 359 Blast hits to 351 proteins in 117 species: Archae - 8; Bacteria - 143; Metazoa - 0; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). & (reliability: 824.0) & (original description: no original description)


Gene families : OG_42_0001390 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027375-RA
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
At1g13130 No alias At1g13130 [Source:UniProtKB/TrEMBL;Acc:Q66GP7] 0.02 Orthogroups_2024-Update
Bradi5g13560 No alias Cellulase (glycosyl hydrolase family 5) protein 0.06 Orthogroups_2024-Update
GRMZM2G060023 No alias Cellulase (glycosyl hydrolase family 5) protein 0.05 Orthogroups_2024-Update
Glyma.11G179700 No alias Cellulase (glycosyl hydrolase family 5) protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 57 351
No external refs found!