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  5. PSME_00027418-RA

PSME_00027418-RA


Description : (at1g05490 : 440.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 93.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 880.0) & (original description: no original description)


Gene families : OG_42_0000461 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027418-RA
Cluster HCCA clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43501 No alias chromatin remodeling 31 0.02 Orthogroups_2024-Update
HORVU3Hr1G054100.8 No alias regulatory protein *(CLSY3/4) of transacting siRNA pathway 0.03 Orthogroups_2024-Update
HORVU4Hr1G074230.18 No alias component *(DRD1) of DNA methylation accessory complex 0.02 Orthogroups_2024-Update
MA_15897g0010 No alias (at1g05490 : 435.0) chromatin remodeling 31 (chr31);... 0.05 Orthogroups_2024-Update
Sopen08g026200 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 510 622
IPR000330 SNF2_N 133 346
No external refs found!