PSME_00027447-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00027447-RA
Cluster	HCCA clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15410	No alias	gata transcription factor 12	0.03	Orthogroups_2024-Update
At3g54810	No alias	GATA transcription factor [Source:UniProtKB/TrEMBL;Acc:B9DHF1]	0.04	Orthogroups_2024-Update
Bradi2g12590	No alias	GATA transcription factor 23	0.04	Orthogroups_2024-Update
GRMZM2G104390	No alias	GATA transcription factor 16	0.03	Orthogroups_2024-Update
Glyma.06G008800	No alias	GATA transcription factor 7	0.03	Orthogroups_2024-Update
Glyma.16G139400	No alias	GATA type zinc finger transcription factor family protein	0.03	Orthogroups_2024-Update
HORVU4Hr1G079070.4	No alias	transcription factor *(A/B-GATA)	0.06	Orthogroups_2024-Update
Kfl00028_0250	kfl00028_0250_v1.1	(at5g66320 : 112.0) Encodes GATA transcription factor...	0.02	Orthogroups_2024-Update
Potri.007G024500	No alias	GATA type zinc finger transcription factor family protein	0.02	Orthogroups_2024-Update
Solyc03g120890	No alias	GATA transcription factor (AHRD V3.3 *** K4BMN8_SOLLC)	0.03	Orthogroups_2024-Update
Sopen04g007430	No alias	GATA zinc finger	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0071949	FAD binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	47	81

External Links

No external refs found!

PSME_00027447-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation