1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00027538-RA

PSME_00027538-RA


Description : (at5g52390 : 144.0) PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT3G54040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)


Gene families : OG_42_0000813 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000813_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027538-RA
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G138000 No alias PAR1 protein 0.03 Orthogroups_2024-Update
MA_35310g0010 No alias (at5g52390 : 151.0) PAR1 protein; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
PSME_00003254-RA No alias (at5g52390 : 145.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00003255-RA No alias (at5g52390 : 131.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00010407-RA No alias (at5g52390 : 152.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00029735-RA No alias (at5g52390 : 155.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00029736-RA No alias (at3g54040 : 164.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
PSME_00049159-RA No alias (at5g52390 : 150.0) PAR1 protein; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
Solyc09g011800 No alias PAR1 protein (AHRD V3.3 *** A0A061EYI9_THECC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR009489 PAR1 52 206
No external refs found!