1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00027563-RA

PSME_00027563-RA


Description : (at1g05380 : 299.0) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description)


Gene families : OG_42_0000522 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000522_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027563-RA
Cluster HCCA clusters: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
80470 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Orthogroups_2024-Update
Bradi1g08727 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Orthogroups_2024-Update
Bradi1g55990 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 Orthogroups_2024-Update
Bradi5g27517 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.06 Orthogroups_2024-Update
Brara.J00362.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G173852 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
Glyma.01G238200 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
Glyma.01G238300 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.05 Orthogroups_2024-Update
Glyma.02G146500 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
Glyma.11G005300 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Orthogroups_2024-Update
Glyma.11G005500 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.06 Orthogroups_2024-Update
Glyma.12G228700 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.07 Orthogroups_2024-Update
Glyma.13G271100 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.03 Orthogroups_2024-Update
HORVU5Hr1G094760.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00059_0330 kfl00059_0330_v1.... (at3g14980 : 157.0) Acyl-CoA N-acyltransferase with... 0.02 Orthogroups_2024-Update
Kfl00544_0060 kfl00544_0060_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_14500g0010 No alias (at1g05380 : 422.0) Acyl-CoA N-acyltransferase with... 0.07 Orthogroups_2024-Update
Mp6g21090.2 No alias PHD finger transcription factor 0.05 Orthogroups_2024-Update
Seita.3G002500.1 No alias component *(IDM1) of ROS1-recruitment complex 0.03 Orthogroups_2024-Update
evm.model.tig00020563.181 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 950 991
IPR032308 Jas 838 909
No external refs found!