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  5. PSME_00027610-RA

PSME_00027610-RA


Description : (at3g16240 : 298.0) Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.; delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink). & (p21653|tip1_tobac : 292.0) Probable aquaporin TIP-type RB7-5A (Tonoplast intrinsic protein, root-specific RB7-5A) (TobRB7) (RT-TIP) - Nicotiana tabacum (Common tobacco) & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0000183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027610-RA
Cluster HCCA clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
A4A49_03881 No alias putative aquaporin tip-type rb7-18c 0.04 Orthogroups_2024-Update
Brara.B02983.1 No alias tonoplast intrinsic protein *(TIP) 0.02 Orthogroups_2024-Update
GRMZM2G103983 No alias Aquaporin-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G160500 No alias Aquaporin-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os02g44080 No alias aquaporin protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_46360g0010 No alias (at2g36830 : 328.0) Encodes a tonoplast intrinsic... 0.04 Orthogroups_2024-Update
PSME_00044267-RA No alias (at3g16240 : 295.0) Delta tonoplast intrinsic protein,... 0.03 Orthogroups_2024-Update
Potri.017G154800 No alias beta-tonoplast intrinsic protein 0.02 Orthogroups_2024-Update
Solyc06g060760 No alias tonoplast intrinsic protein 2.3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR000425 MIP 17 234
No external refs found!