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  5. PSME_00027624-RA

PSME_00027624-RA


Description : (at1g79740 : 142.0) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027624-RA
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
PSME_00003380-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00019385-RA No alias (at5g33406 : 84.7) hAT dimerisation domain-containing... 0.05 Orthogroups_2024-Update
PSME_00020534-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00021945-RA No alias (at5g33406 : 100.0) hAT dimerisation domain-containing... 0.05 Orthogroups_2024-Update
PSME_00022081-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00025529-RA No alias (at1g79740 : 126.0) hAT transposon superfamily;... 0.03 Orthogroups_2024-Update
PSME_00028922-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00029885-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00037377-RA No alias (at5g33406 : 94.0) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update
PSME_00038047-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00044994-RA No alias (at1g79740 : 87.0) hAT transposon superfamily; FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00054772-RA No alias (at1g79740 : 144.0) hAT transposon superfamily;... 0.03 Orthogroups_2024-Update
PSME_00055607-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00057200-RA No alias (at5g33406 : 93.6) hAT dimerisation domain-containing... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007021 DUF659 1 91
No external refs found!