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  5. PSME_00027653-RA

PSME_00027653-RA


Description : (at5g53950 : 285.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 226.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027653-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_10514 No alias nac domain-containing protein 37 0.04 Orthogroups_2024-Update
A4A49_58267 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At1g33280 No alias NAC015 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M7] 0.03 Orthogroups_2024-Update
At3g29035 No alias NAC domain-containing protein 59... 0.03 Orthogroups_2024-Update
Brara.D00978.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Brara.G01307.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01794.1 No alias NAC-type transcription factor 0.04 Orthogroups_2024-Update
Brara.H00641.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J02740.1 No alias NAC-type transcription factor & regulatory factor... 0.03 Orthogroups_2024-Update
Brara.K00472.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G091490 No alias NAC (No Apical Meristem) domain transcriptional... 0.02 Orthogroups_2024-Update
GRMZM2G456568 No alias NAC domain containing protein 82 0.02 Orthogroups_2024-Update
Glyma.05G234200 No alias NAC domain containing protein 58 0.02 Orthogroups_2024-Update
Glyma.08G041500 No alias NAC domain containing protein 58 0.03 Orthogroups_2024-Update
Glyma.12G186851 No alias NTM1-like 8 0.03 Orthogroups_2024-Update
Glyma.16G019400 No alias NAC (No Apical Meristem) domain transcriptional... 0.05 Orthogroups_2024-Update
Glyma.16G217400 No alias NAC domain containing protein 57 0.02 Orthogroups_2024-Update
LOC_Os03g02800 No alias no apical meristem protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g01480 No alias NAC domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g33940 No alias NAC domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32260 No alias no apical meristem protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g03050 No alias no apical meristem protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G120000 No alias NAC 007 0.02 Orthogroups_2024-Update
Potri.005G058900 No alias NAC domain containing protein 82 0.02 Orthogroups_2024-Update
Potri.008G031800 No alias NAC domain containing protein 2 0.02 Orthogroups_2024-Update
Potri.010G176600 No alias NAC (No Apical Meristem) domain transcriptional... 0.02 Orthogroups_2024-Update
Potri.012G126500 No alias NAC 007 0.02 Orthogroups_2024-Update
Potri.017G139500 No alias NAC domain containing protein 28 0.02 Orthogroups_2024-Update
Pp1s223_12V6 No alias nac domain ipr003441 0.02 Orthogroups_2024-Update
Pp1s304_12V6 No alias nac domain-containing 0.03 Orthogroups_2024-Update
Seita.2G260000.1 No alias NAC-type transcription factor 0.06 Orthogroups_2024-Update
Seita.7G124900.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Seita.9G314000.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G112200.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Solyc03g115850 No alias NAC domain-containing protein 0.03 Orthogroups_2024-Update
Solyc05g055470 No alias NAC domain protein, (AHRD V3.3 *** A0A061FNG1_THECC) 0.02 Orthogroups_2024-Update
Solyc06g034340 No alias NAC domain protein, (AHRD V3.3 *** A0A061G781_THECC) 0.02 Orthogroups_2024-Update
Sopen03g034840 No alias No apical meristem (NAM) protein 0.02 Orthogroups_2024-Update
Sopen05g033920 No alias No apical meristem (NAM) protein 0.03 Orthogroups_2024-Update
Sopen06g029400 No alias No apical meristem (NAM) protein 0.02 Orthogroups_2024-Update
Sopen11g003870 No alias No apical meristem (NAM) protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR003441 NAC-dom 32 158
No external refs found!