PSME_00027655-RA

Description : (at1g51190 : 368.0) Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.; PLETHORA 2 (PLT2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1); Has 7787 Blast hits to 5250 proteins in 253 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 7694; Viruses - 2; Other Eukaryotes - 79 (source: NCBI BLink). & (q8lsn2|bbm2_brana : 361.0) Protein BABY BOOM 2 (BnBBM2) - Brassica napus (Rape) & (reliability: 722.0) & (original description: no original description)

Gene families : OG_42_0000060 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00027655-RA

Target	Alias	Description	ECC score	Gene Family Method
85823	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
A4A49_28363	No alias	ap2-like ethylene-responsive transcription factor ail5	0.01	Orthogroups_2024-Update
Bradi1g69209	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Bradi2g48130	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Brara.A00121.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.04	Orthogroups_2024-Update
Brara.B01045.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.02	Orthogroups_2024-Update
Brara.F01116.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.01	Orthogroups_2024-Update
Brara.G01191.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.01	Orthogroups_2024-Update
Brara.I03764.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.02	Orthogroups_2024-Update
Glyma.07G021000	No alias	ARIA-interacting double AP2 domain protein	0.02	Orthogroups_2024-Update
Glyma.08G220800	No alias	ARIA-interacting double AP2 domain protein	0.01	Orthogroups_2024-Update
Glyma.11G045800	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Glyma.18G125200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G011800.24	No alias	AP2-type transcription factor *(WRI/AIL)	0.02	Orthogroups_2024-Update
HORVU2Hr1G113880.23	No alias	AP2-type transcription factor *(WRI/AIL)	0.01	Orthogroups_2024-Update
Kfl00124_0020	kfl00124_0020_v1.1	no hits & (original description: no original description)	0.07	Orthogroups_2024-Update
LOC_Os06g44750	No alias	AP2 domain containing protein, expressed	0.01	Orthogroups_2024-Update
MA_8090186g0010	No alias	(at4g36920 : 324.0) Encodes a floral homeotic gene, a...	0.02	Orthogroups_2024-Update
Seita.7G263000.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.03	Orthogroups_2024-Update
Seita.8G031900.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.04	Orthogroups_2024-Update
Sobic.002G206400.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.03	Orthogroups_2024-Update
Sobic.004G214300.1	No alias	AP2-type transcription factor *(WRI/AIL)	0.01	Orthogroups_2024-Update
Solyc03g044300	No alias	APETALA2a	0.02	Orthogroups_2024-Update
Solyc11g072600	No alias	APETALA2d	0.02	Orthogroups_2024-Update
Sopen03g041210	No alias	AP2 domain	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	530	579
IPR001471	AP2/ERF_dom	430	485

External Links

No external refs found!

PSME_00027655-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation