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  5. Sopen06g001180

Sopen06g001180


Description : RING/Ubox like zinc-binding domain


Gene families : OG_42_0002171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g001180
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
A4A49_10847 No alias hypothetical protein 0.02 Orthogroups_2024-Update
A4A49_61093 No alias hypothetical protein 0.04 Orthogroups_2024-Update
At2g28540 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.06 Orthogroups_2024-Update
Bradi4g45240 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
GRMZM2G091583 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Potri.006G132300 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Potri.016G084700 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Seita.6G218200.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
Solyc04g009510 No alias Nuclear transcription factor Y subunit B (AHRD V3.3 *-*... 0.04 Orthogroups_2024-Update
Solyc11g072590 No alias CCR4-NOT transcription complex subunit 4 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 190
No external refs found!