1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00027856-RA

PSME_00027856-RA


Description : (p49076|arf_maize : 218.0) ADP-ribosylation factor - Zea mays (Maize) & (at1g70490 : 215.0) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.; ARFA1D; FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 430.0) & (original description: no original description)


Gene families : OG_42_0000220 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027856-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
At1g23490 No alias ADP-ribosylation factor 2-B... 0.03 Orthogroups_2024-Update
At2g15310 No alias Probable ADP-ribosylation factor At2g15310... 0.03 Orthogroups_2024-Update
Brara.G00977.1 No alias ARF-GTPase *(ARF1) 0.02 Orthogroups_2024-Update
Brara.G02439.1 No alias ARF-GTPase *(ARF1) 0.03 Orthogroups_2024-Update
Brara.G02969.1 No alias ARF-GTPase *(ARF1) 0.03 Orthogroups_2024-Update
GRMZM2G395844 No alias ADP-ribosylation factor A1B 0.02 Orthogroups_2024-Update
LOC_Os07g12170 No alias ADP-ribosylation factor, putative, expressed 0.03 Orthogroups_2024-Update
Solyc04g025560 No alias ADP-ribosylation factor (AHRD V3.3 *** ARF_VIGUN) 0.03 Orthogroups_2024-Update
Sopen02g037530 No alias ADP-ribosylation factor family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR006689 Small_GTPase_ARF/SAR 16 178
No external refs found!