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  5. PSME_00027939-RA

PSME_00027939-RA


Description : (at5g20480 : 394.0) Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu.; EF-TU receptor (EFR); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein kinase activity, kinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47090.1); Has 211073 Blast hits to 132033 proteins in 4602 species: Archae - 167; Bacteria - 19808; Metazoa - 69159; Fungi - 9873; Plants - 87247; Viruses - 333; Other Eukaryotes - 24486 (source: NCBI BLink). & (p93194|rpk1_iponi : 320.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 788.0) & (original description: no original description)


Gene families : OG_42_0000007 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00027939-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_04895 No alias putative lrr receptor-like serinethreonine-protein kinase 0.02 Orthogroups_2024-Update
A4A49_26079 No alias putative lrr receptor-like serinethreonine-protein kinase 0.03 Orthogroups_2024-Update
At1g34290 No alias Receptor-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID2] 0.03 Orthogroups_2024-Update
Brara.C00937.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Brara.C01494.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
GRMZM2G162829 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Glyma.17G071700 No alias Leucine-rich receptor-like protein kinase family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G086400.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
HORVU5Hr1G122510.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
HORVU7Hr1G002010.4 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G002130.4 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
LOC_Os06g38340 No alias receptor-like protein kinase precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g07200 No alias receptor protein kinase CLAVATA1 precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10432898g0010 No alias (at3g47570 : 310.0) Leucine-rich repeat protein kinase... 0.04 Orthogroups_2024-Update
MA_10432906g0020 No alias (at5g46330 : 129.0) Encodes a leucine-rich repeat... 0.03 Orthogroups_2024-Update
MA_514155g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00046727-RA No alias (at3g47090 : 561.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00055533-RA No alias (at3g47110 : 628.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
Potri.001G042500 No alias Leucine-rich receptor-like protein kinase family protein 0.03 Orthogroups_2024-Update
Potri.013G133100 No alias Leucine-rich repeat protein kinase family protein 0.03 Orthogroups_2024-Update
Seita.1G038500.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Seita.1G233300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G396700.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Seita.4G231200.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.04 Orthogroups_2024-Update
Seita.4G231800.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Seita.5G105200.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.02 Orthogroups_2024-Update
Seita.6G079200.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Sobic.002G086900.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.02 Orthogroups_2024-Update
Sobic.005G065000.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 159 200
IPR001611 Leu-rich_rpt 550 609
IPR001611 Leu-rich_rpt 277 337
IPR001611 Leu-rich_rpt 414 458
IPR001611 Leu-rich_rpt 354 410
No external refs found!