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  5. PSME_00028054-RA

PSME_00028054-RA


Description : (at1g07900 : 124.0) LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description)


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028054-RA
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_03191 No alias lob domain-containing protein 15 0.02 Orthogroups_2024-Update
A4A49_10474 No alias lob domain-containing protein 25 0.02 Orthogroups_2024-Update
A4A49_32358 No alias lob domain-containing protein 15 0.08 Orthogroups_2024-Update
At2g30130 No alias PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1] 0.04 Orthogroups_2024-Update
At2g30340 No alias LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4] 0.05 Orthogroups_2024-Update
Brara.B01673.1 No alias AS2/LOB-type transcription factor 0.05 Orthogroups_2024-Update
Brara.F02209.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Brara.G01214.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.13G349700 No alias LOB domain-containing protein 22 0.04 Orthogroups_2024-Update
Glyma.15G045200 No alias LOB domain-containing protein 11 0.04 Orthogroups_2024-Update
Glyma.15G258100 No alias LOB domain-containing protein 4 0.04 Orthogroups_2024-Update
LOC_Os01g60960 No alias DUF260 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g07270 No alias DUF260 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10429262g0010 No alias (at5g63090 : 192.0) Involved in lateral organ... 0.03 Orthogroups_2024-Update
MA_161608g0010 No alias (at5g63090 : 189.0) Involved in lateral organ... 0.05 Orthogroups_2024-Update
MA_16891g0010 No alias (at5g63090 : 175.0) Involved in lateral organ... 0.03 Orthogroups_2024-Update
MA_16891g0020 No alias (at5g63090 : 162.0) Involved in lateral organ... 0.05 Orthogroups_2024-Update
MA_61242g0010 No alias (at5g63090 : 153.0) Involved in lateral organ... 0.06 Orthogroups_2024-Update
MA_9412105g0010 No alias (at2g40470 : 200.0) LOB domain-containing protein 15... 0.03 Orthogroups_2024-Update
MA_9924708g0010 No alias (at1g31320 : 131.0) LOB domain-containing protein 4... 0.04 Orthogroups_2024-Update
Mp5g11460.1 No alias transcription factor (AS2/LOB) 0.03 Orthogroups_2024-Update
PSME_00022332-RA No alias (at2g40470 : 197.0) LOB domain-containing protein 15... 0.05 Orthogroups_2024-Update
PSME_00042673-RA No alias (at1g07900 : 125.0) LOB domain-containing protein 1... 0.03 Orthogroups_2024-Update
PSME_00043015-RA No alias (at2g28500 : 127.0) LOB domain-containing protein 11... 0.03 Orthogroups_2024-Update
PSME_00045603-RA No alias (at2g40470 : 164.0) LOB domain-containing protein 15... 0.04 Orthogroups_2024-Update
PSME_00048913-RA No alias (at2g28500 : 129.0) LOB domain-containing protein 11... 0.06 Orthogroups_2024-Update
PSME_00055494-RA No alias (at1g07900 : 139.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
Potri.012G083500 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Potri.014G167100 No alias LOB domain-containing protein 11 0.03 Orthogroups_2024-Update
Pp1s73_7V6 No alias lob domain-containing 0.02 Orthogroups_2024-Update
Seita.3G045800.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Seita.9G443300.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.003G383700.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.008G005000.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g044520 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc05g048740 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc06g082310 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 22 119
No external refs found!