Sopen06g001360

Description : Core histone H2A/H2B/H3/H4

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g001360
Cluster	HCCA clusters: Cluster_354

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g23230	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Bradi2g27760	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
Cre06.g275800	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
Cre06.g276550	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre17.g709150	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre17.g710450	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre17.g711750	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre17.g713450	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
HORVU6Hr1G005950.2	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
Kfl00099_g20	kfl00099_g20_v1.1...	(p54347\|h2b4_chlre : 156.0) Histone H2B.4 (H2B-IV) -...	0.05	Orthogroups_2024-Update
MA_138049g0010	No alias	(at3g45980 : 141.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
MA_38565g0010	No alias	(at3g45980 : 175.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
Sobic.003G200501.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	5	123

External Links

No external refs found!