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  5. PSME_00028309-RA

PSME_00028309-RA


Description : (at1g04880 : 238.0) HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description)


Gene families : OG_42_0001716 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028309-RA
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Sobic.004G143300.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 330 397
IPR001606 ARID_dom 102 186
No external refs found!