1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00028385-RA

PSME_00028385-RA


Description : (at1g67480 : 421.0) Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27420.1); Has 11510 Blast hits to 6062 proteins in 581 species: Archae - 21; Bacteria - 896; Metazoa - 8265; Fungi - 112; Plants - 1475; Viruses - 165; Other Eukaryotes - 576 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description)


Gene families : OG_42_0002284 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002284_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028385-RA
Cluster HCCA clusters: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G068790.6 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g30210 No alias OsFBK7 - F-box domain and kelch repeat containing... 0.02 Orthogroups_2024-Update
LOC_Os04g31120 No alias OsFBK14 - F-box domain and kelch repeat containing... 0.03 Orthogroups_2024-Update
MA_10279796g0010 No alias (at1g67480 : 412.0) Galactose oxidase/kelch repeat... 0.03 Orthogroups_2024-Update
MA_137994g0010 No alias (at1g67480 : 402.0) Galactose oxidase/kelch repeat... 0.03 Orthogroups_2024-Update
PSME_00028384-RA No alias (at1g67480 : 398.0) Galactose oxidase/kelch repeat... 0.03 Orthogroups_2024-Update
PSME_00037971-RA No alias (at1g67480 : 337.0) Galactose oxidase/kelch repeat... 0.02 Orthogroups_2024-Update
Potri.013G104300 No alias Galactose oxidase/kelch repeat superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006652 Kelch_1 235 280
IPR006652 Kelch_1 185 232
IPR006652 Kelch_1 287 327
IPR001810 F-box_dom 97 136
No external refs found!