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  5. PSME_00028440-RA

PSME_00028440-RA


Description : (at1g15950 : 421.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (p51104|dfra_diaca : 197.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 842.0) & (original description: no original description)


Gene families : OG_42_0000056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028440-RA
Cluster HCCA clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AC234526.1_FG005 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g01900 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Brara.D02044.1 No alias phaseic acid reductase *(CRL1/2) 0.02 Orthogroups_2024-Update
Brara.I03086.1 No alias tetraketide alpha-pyrone reductase *(TKPR) 0.03 Orthogroups_2024-Update
Brara.J01234.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J01643.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G468439 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G018500 No alias dihydroflavonol 4-reductase-like1 0.02 Orthogroups_2024-Update
HORVU5Hr1G073770.1 No alias phaseic acid reductase *(CRL1/2) 0.02 Orthogroups_2024-Update
LOC_Os01g44260 No alias dihydroflavonol-4-reductase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32020 No alias ubiquitin fusion degradation protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_29397g0010 No alias (at1g15950 : 219.0) Encodes a cinnamoyl CoA reductase.... 0.03 Orthogroups_2024-Update
MA_46269g0010 No alias (at1g68540 : 427.0) NAD(P)-binding Rossmann-fold... 0.03 Orthogroups_2024-Update
MA_55720g0010 No alias (at1g15950 : 222.0) Encodes a cinnamoyl CoA reductase.... 0.03 Orthogroups_2024-Update
MA_629320g0010 No alias (at1g15950 : 273.0) Encodes a cinnamoyl CoA reductase.... 0.03 Orthogroups_2024-Update
MA_647658g0010 No alias (p51110|dfra_vitvi : 461.0) Dihydroflavonol-4-reductase... 0.03 Orthogroups_2024-Update
Mp8g08710.1 No alias Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00010223-RA No alias (at1g68540 : 425.0) NAD(P)-binding Rossmann-fold... 0.04 Orthogroups_2024-Update
PSME_00011996-RA No alias (at1g61720 : 302.0) Negative regulator of flavonoid... 0.06 Orthogroups_2024-Update
PSME_00013605-RA No alias (at2g23910 : 108.0) NAD(P)-binding Rossmann-fold... 0.05 Orthogroups_2024-Update
PSME_00025560-RA No alias (at1g80820 : 325.0) Encodes an cinnamoyl CoA reductase... 0.04 Orthogroups_2024-Update
PSME_00030151-RA No alias (at1g15950 : 342.0) Encodes a cinnamoyl CoA reductase.... 0.05 Orthogroups_2024-Update
PSME_00031733-RA No alias (at5g58490 : 318.0) NAD(P)-binding Rossmann-fold... 0.05 Orthogroups_2024-Update
PSME_00044637-RA No alias (p51110|dfra_vitvi : 322.0) Dihydroflavonol-4-reductase... 0.04 Orthogroups_2024-Update
Potri.001G256400 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G229500 No alias dihydroflavonol 4-reductase 0.03 Orthogroups_2024-Update
Potri.005G257700 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Orthogroups_2024-Update
Potri.009G057700 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.04 Orthogroups_2024-Update
Pp1s39_342V6 No alias cinnamoyl- reductase 0.02 Orthogroups_2024-Update
Seita.2G147600.1 No alias cinnamoyl-CoA reductase *(CCR) 0.05 Orthogroups_2024-Update
Seita.5G057600.1 No alias cinnamoyl-CoA reductase *(CCR) 0.02 Orthogroups_2024-Update
Sobic.003G342200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G141200.1 No alias cinnamoyl-CoA reductase *(CCR) 0.02 Orthogroups_2024-Update
Sobic.010G066000.1 No alias cinnamoyl-CoA reductase *(CCR) 0.02 Orthogroups_2024-Update
Solyc01g008540 No alias Cinnamoyl CoA reductase-like protein (AHRD V1 ***- B9HNY0_POPTR) 0.02 Orthogroups_2024-Update
Sopen06g025690 No alias NAD dependent epimerase/dehydratase family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0050662 coenzyme binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 16 252
No external refs found!