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  5. PSME_00028518-RA

PSME_00028518-RA


Description : (at1g09170 : 302.0) P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: shoot, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0; Bacteria - 101; Metazoa - 5767; Fungi - 1479; Plants - 1905; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink). & (p46870|klp1_chlre : 140.0) Kinesin-like protein KLP1 - Chlamydomonas reinhardtii & (reliability: 604.0) & (original description: no original description)


Gene families : OG_42_0000091 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000091_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028518-RA
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Bradi1g59490 No alias kinesin 5 0.02 Orthogroups_2024-Update
MA_4980g0010 No alias (at4g21270 : 375.0) Encodes a kinesin-like motor protein... 0.01 Orthogroups_2024-Update
PSME_00000453-RA No alias (at2g47500 : 508.0) P-loop nucleoside triphosphate... 0.02 Orthogroups_2024-Update
PSME_00003322-RA No alias (at2g22610 : 775.0) Di-glucose binding protein with... 0.03 Orthogroups_2024-Update
PSME_00047207-RA No alias (at3g44730 : 518.0) kinesin-like protein 1 (KP1);... 0.02 Orthogroups_2024-Update
Potri.T050150 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Sopen04g008170 No alias Kinesin motor domain 0.02 Orthogroups_2024-Update
Sopen06g026410 No alias Kinesin motor domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0007018 microtubule-based movement IEA InterProScan predictions
MF GO:0008017 microtubule binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001715 CH-domain 34 131
IPR001752 Kinesin_motor_dom 204 420
No external refs found!