PSME_00028592-RA

Description : (at1g12220 : 233.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 466.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00028592-RA

Target	Alias	Description	ECC score	Gene Family Method
Brara.I05123.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Glyma.09G258200	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.03	Orthogroups_2024-Update
HORVU3Hr1G108500.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os04g39460	No alias	NBS-LRR type disease resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_5225445g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
Potri.001G313301	No alias	Disease resistance protein (CC-NBS-LRR class) family	0.02	Orthogroups_2024-Update
Potri.018G136301	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T003600	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
Potri.T013200	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T026900	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Solyc08g007250	No alias	Disease resistance protein (AHRD V3.3 *** W9RZV6_9ROSA)	0.03	Orthogroups_2024-Update
Sopen10g028090	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004363	glutathione synthase activity	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006750	glutathione biosynthetic process	IEP	Predicted GO
BP	GO:0006790	sulfur compound metabolic process	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predicted GO
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Predicted GO
MF	GO:0019842	vitamin binding	IEP	Predicted GO
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predicted GO
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0051188	cofactor biosynthetic process	IEP	Predicted GO
MF	GO:0070279	vitamin B6 binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	533	592
IPR002182	NB-ARC	148	384

External Links

No external refs found!

PSME_00028592-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation