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  5. PSME_00028622-RA

PSME_00028622-RA


Description : (at4g32880 : 451.0) member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.; homeobox gene 8 (HB-8); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G52150.1); Has 3304 Blast hits to 3224 proteins in 267 species: Archae - 0; Bacteria - 6; Metazoa - 860; Fungi - 101; Plants - 2302; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)


Gene families : OG_42_0000541 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000541_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028622-RA
Cluster HCCA clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
77000 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.02 Orthogroups_2024-Update
GRMZM2G423337 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Orthogroups_2024-Update
PSME_00024422-RA No alias (at1g52150 : 777.0) Member of the class III HD-ZIP... 0.04 Orthogroups_2024-Update
Seita.5G141300.1 No alias HD-ZIP III-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0008289 lipid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 153 280
IPR013978 MEKHLA 421 550
IPR001356 Homeobox_dom 5 63
No external refs found!