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  5. PSME_00028638-RA

PSME_00028638-RA


Description : (at5g05390 : 656.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40588|aso_tobac : 213.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Nicotiana tabacum (Common tobacco) & (reliability: 1312.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028638-RA
Cluster HCCA clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
78002 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
A4A49_13107 No alias laccase-14 0.03 Orthogroups_2024-Update
A4A49_60125 No alias laccase-17 0.03 Orthogroups_2024-Update
At2g29130 No alias Laccase-2 [Source:UniProtKB/Swiss-Prot;Acc:O81081] 0.03 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.02 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.01 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.03 Orthogroups_2024-Update
Bradi3g59177 No alias laccase 14 0.03 Orthogroups_2024-Update
Bradi4g39330 No alias laccase 7 0.02 Orthogroups_2024-Update
Brara.E01299.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Glyma.03G073778 No alias laccase 7 0.02 Orthogroups_2024-Update
Glyma.03G077900 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.10G219200 No alias laccase 14 0.02 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.03 Orthogroups_2024-Update
Glyma.18G193300 No alias laccase 7 0.04 Orthogroups_2024-Update
HORVU1Hr1G072470.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
HORVU1Hr1G072530.7 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
HORVU3Hr1G086160.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
HORVU3Hr1G086200.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
MA_10428927g0020 No alias (at5g05390 : 676.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_10434864g0010 No alias (at5g05390 : 651.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.05 Orthogroups_2024-Update
MA_75861g0010 No alias (at1g18140 : 648.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.06 Orthogroups_2024-Update
PSME_00005164-RA No alias (at5g05390 : 649.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00005166-RA No alias (at5g05390 : 644.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00007029-RA No alias (at5g05390 : 758.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00007334-RA No alias (at5g05390 : 687.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00010271-RA No alias (at5g05390 : 664.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00012649-RA No alias (at2g30210 : 646.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00013183-RA No alias (at5g60020 : 725.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00015371-RA No alias (at5g05390 : 674.0) putative laccase, a member of... 0.02 Orthogroups_2024-Update
PSME_00015480-RA No alias (at5g05390 : 777.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00023647-RA No alias (at5g60020 : 698.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00024243-RA No alias (at2g38080 : 333.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
PSME_00024478-RA No alias (at5g05390 : 702.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00026986-RA No alias (at5g05390 : 621.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00028664-RA No alias (at5g05390 : 686.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00031239-RA No alias (at1g18140 : 634.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00031560-RA No alias (at5g05390 : 678.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00033093-RA No alias (at2g40370 : 637.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00033274-RA No alias (at5g03260 : 805.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00035589-RA No alias (at5g05390 : 699.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00039507-RA No alias (at5g05390 : 575.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00039722-RA No alias (at5g05390 : 721.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00039922-RA No alias (at5g60020 : 722.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00042058-RA No alias (at5g05390 : 793.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00042270-RA No alias (at5g05390 : 793.0) putative laccase, a member of... 0.06 Orthogroups_2024-Update
PSME_00042445-RA No alias (at5g03260 : 679.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00042485-RA No alias (at5g05390 : 782.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00044158-RA No alias (at2g40370 : 673.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00044448-RA No alias (at5g05390 : 808.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00045772-RA No alias (at5g05390 : 578.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.008G073700 No alias laccase 5 0.03 Orthogroups_2024-Update
Potri.009G034500 No alias laccase 2 0.04 Orthogroups_2024-Update
Potri.010G193100 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.011G120300 No alias laccase 17 0.03 Orthogroups_2024-Update
Potri.016G106000 No alias laccase 7 0.03 Orthogroups_2024-Update
Pp1s206_49V6 No alias laccase 110c 0.02 Orthogroups_2024-Update
Seita.1G320600.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.5G377700.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Seita.5G377800.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.02 Orthogroups_2024-Update
Seita.5G457800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.02 Orthogroups_2024-Update
Seita.9G453900.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Sobic.005G005800.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Sopen02g029810 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001117 Cu-oxidase 176 323
IPR011706 Cu-oxidase_2 429 562
IPR011707 Cu-oxidase_3 53 163
No external refs found!