Sopen06g001650

Description : Nucleic acid binding protein NABP

Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g001650
Cluster	HCCA clusters: Cluster_171

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g39240	No alias	pumilio 1	0.03	Orthogroups_2024-Update
Glyma.11G136700	No alias	pumilio 2	0.03	Orthogroups_2024-Update
HORVU3Hr1G115020.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc04g011580	No alias	Pumilio, putative (AHRD V3.3 *** B9SDY2_RICCO)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012940	NABP	285	341
IPR012940	NABP	352	636
IPR001313	Pumilio_RNA-bd_rpt	819	851
IPR001313	Pumilio_RNA-bd_rpt	638	670
IPR001313	Pumilio_RNA-bd_rpt	710	739
IPR001313	Pumilio_RNA-bd_rpt	748	772
IPR001313	Pumilio_RNA-bd_rpt	855	887
IPR001313	Pumilio_RNA-bd_rpt	904	930
IPR001313	Pumilio_RNA-bd_rpt	782	812
IPR001313	Pumilio_RNA-bd_rpt	674	703

External Links

No external refs found!