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  5. PSME_00028661-RA

PSME_00028661-RA


Description : (at1g10050 : 1042.0) Encodes a putative glycosyl hydrolase family 10 protein (xylanase).; glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink). & (reliability: 1884.0) & (original description: no original description)


Gene families : OG_42_0002898 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002898_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028661-RA
Cluster HCCA clusters: Cluster_188


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR001000 GH10 774 1031
IPR003305 CenC_carb-bd 571 713
IPR003305 CenC_carb-bd 401 536
IPR003305 CenC_carb-bd 7 144
IPR003305 CenC_carb-bd 177 312
No external refs found!