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  5. Sopen06g001680

Sopen06g001680


Description : PPR repeat family


Gene families : OG_42_0011959 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011959_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g001680
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Bradi2g62030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
PSME_00029634-RA No alias (at4g33170 : 463.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.009G035100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 18 50
IPR002885 Pentatricopeptide_repeat 256 301
IPR002885 Pentatricopeptide_repeat 357 403
IPR002885 Pentatricopeptide_repeat 154 200
IPR002885 Pentatricopeptide_repeat 52 98
IPR002885 Pentatricopeptide_repeat 433 456
No external refs found!