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  5. PSME_00028983-RA

PSME_00028983-RA


Description : (at5g61150 : 317.0) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.; VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink). & (reliability: 634.0) & (original description: no original description)


Gene families : OG_42_0005410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005410_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00028983-RA
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G063950.1 No alias component *(VIP4/LEO1) of PAF1C transcription initiation... 0.03 Orthogroups_2024-Update
evm.model.tig00020918.2 No alias (at5g61150 : 95.5) Encodes highly hydrophilic protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEA InterProScan predictions
BP GO:0016570 histone modification IEA InterProScan predictions
CC GO:0016593 Cdc73/Paf1 complex IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007149 Leo1 303 462
No external refs found!