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  5. Sopen06g001970

Sopen06g001970


Description : DSHCT (NUC185) domain


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g001970
Cluster HCCA clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
79650 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Cre11.g482483 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G025670.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.03 Orthogroups_2024-Update
PSME_00022970-RA No alias (at2g06990 : 1419.0) encodes a putative DExH-box RNA... 0.02 Orthogroups_2024-Update
Sobic.004G048800.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 859 1156
IPR012961 Ski2_C 1184 1353
IPR011545 DEAD/DEAH_box_helicase_dom 370 517
No external refs found!