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  5. PSME_00029264-RA

PSME_00029264-RA


Description : (at3g50130 : 92.4) Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf apex, root, flower, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50140.1); Has 12220 Blast hits to 6577 proteins in 475 species: Archae - 26; Bacteria - 903; Metazoa - 4175; Fungi - 967; Plants - 4043; Viruses - 563; Other Eukaryotes - 1543 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)


Gene families : OG_42_0000095 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000095_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029264-RA
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
At4g31980 No alias PPPDE thiol peptidase family protein... 0.04 Orthogroups_2024-Update
Bradi4g16496 No alias Plant protein of unknown function (DUF247) 0.03 Orthogroups_2024-Update
Bradi5g23930 No alias Plant protein of unknown function (DUF247) 0.03 Orthogroups_2024-Update
GRMZM2G030197 No alias Plant protein of unknown function (DUF247) 0.03 Orthogroups_2024-Update
Glyma.06G306200 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.10G266500 No alias Plant protein of unknown function (DUF247) 0.02 Orthogroups_2024-Update
LOC_Os01g21650 No alias plant protein of unknown function domain containing... 0.02 Orthogroups_2024-Update
LOC_Os05g10900 No alias plant protein of unknown function domain containing... 0.02 Orthogroups_2024-Update
LOC_Os08g30520 No alias plant protein of unknown function domain containing... 0.03 Orthogroups_2024-Update
Potri.001G071300 No alias Plant protein of unknown function (DUF247) 0.05 Orthogroups_2024-Update
Potri.T138400 No alias Plant protein of unknown function (DUF247) 0.02 Orthogroups_2024-Update
Sobic.006G239700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g008900 No alias transmembrane protein, putative (DUF247) (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen01g021850 No alias Plant protein of unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004158 DUF247_pln 147 312
IPR004158 DUF247_pln 343 397
No external refs found!