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  5. PSME_00029327-RA

PSME_00029327-RA


Description : (at3g24255 : 82.4) RNA-directed DNA polymerase (reverse transcriptase)-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 169 Blast hits to 169 proteins in 55 species: Archae - 8; Bacteria - 18; Metazoa - 36; Fungi - 11; Plants - 53; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description)


Gene families : OG_42_0000720 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029327-RA
Cluster HCCA clusters: Cluster_337

Target Alias Description ECC score Gene Family Method Actions
PSME_00014714-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00016902-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00023509-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 864 932
No external refs found!