Description : (at5g63180 : 504.0) Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G24780.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40973|pel_lillo : 360.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 1008.0) & (original description: no original description)
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00029400-RA | |
Cluster | HCCA clusters: Cluster_81 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_12542 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
A4A49_16129 | No alias | putative pectate lyase 18 | 0.03 | Orthogroups_2024-Update | |
A4A49_24630 | No alias | putative pectate lyase 3 | 0.02 | Orthogroups_2024-Update | |
A4A49_31246 | No alias | putative pectate lyase 12 | 0.02 | Orthogroups_2024-Update | |
A4A49_35525 | No alias | putative pectate lyase 16 | 0.02 | Orthogroups_2024-Update | |
At1g14420 | No alias | Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] | 0.04 | Orthogroups_2024-Update | |
Brara.G02558.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
Brara.H03034.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.03 | Orthogroups_2024-Update | |
Glyma.17G011200 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.17G126500 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.20G112600 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
LOC_Os06g05260 | No alias | pectate lyase precursor, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_101171g0010 | No alias | (at1g67750 : 487.0) Pectate lyase family protein;... | 0.06 | Orthogroups_2024-Update | |
MA_10205415g0010 | No alias | (at5g63180 : 429.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
MA_10426822g0020 | No alias | (at1g67750 : 481.0) Pectate lyase family protein;... | 0.06 | Orthogroups_2024-Update | |
MA_203992g0010 | No alias | (at4g24780 : 544.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
MA_91467g0010 | No alias | (at4g24780 : 570.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
MA_91467g0020 | No alias | (at4g24780 : 289.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
MA_97947g0010 | No alias | (at1g67750 : 510.0) Pectate lyase family protein;... | 0.06 | Orthogroups_2024-Update | |
Mp8g00770.1 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
PSME_00005709-RA | No alias | (at3g07010 : 494.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
PSME_00020782-RA | No alias | (at5g63180 : 492.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
PSME_00023843-RA | No alias | (at4g13710 : 610.0) Pectin lyase-like superfamily... | 0.04 | Orthogroups_2024-Update | |
PSME_00036578-RA | No alias | (at5g48900 : 578.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
PSME_00044682-RA | No alias | (at1g67750 : 551.0) Pectate lyase family protein;... | 0.05 | Orthogroups_2024-Update | |
Potri.001G052300 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.003G175900 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.014G178100 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.015G087800 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s173_162V6 | No alias | pectate lyase | 0.05 | Orthogroups_2024-Update | |
Pp1s1_550V6 | No alias | Pectate lyase precursor (ZePel) [Zinnia elegans] | 0.07 | Orthogroups_2024-Update | |
Pp1s28_242V6 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
Pp1s355_16V6 | No alias | pectate lyase | 0.06 | Orthogroups_2024-Update | |
Pp1s409_2V6 | No alias | pectate lyase | 0.04 | Orthogroups_2024-Update | |
Pp1s84_82V6 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
Pp1s92_84V6 | No alias | F12A21.12; pectate lyase family protein [Arabidopsis thaliana] | 0.08 | Orthogroups_2024-Update | |
Sobic.006G014400.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.07 | Orthogroups_2024-Update | |
Solyc09g061890 | No alias | Pectate lyase (AHRD V3.3 *** M1BAL5_SOLTU) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002022 | Pec_lyase | 168 | 353 |
No external refs found! |