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  5. PSME_00029446-RA

PSME_00029446-RA


Description : (at1g12540 : 86.7) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G62975.1); Has 394 Blast hits to 394 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 387; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description)


Gene families : OG_42_0000435 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029446-RA
Cluster HCCA clusters: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
Bradi2g00740 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.K00200.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.06G291900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G150000 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
PSME_00004971-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00004974-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00006710-RA No alias (at4g25400 : 87.4) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
PSME_00012479-RA No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
PSME_00017592-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00040197-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00047140-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00050087-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00052913-RA No alias (at4g25400 : 80.9) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update
Potri.015G134300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Sobic.003G102200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc06g035490 No alias bHLH transcription factor 042 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 103 155
No external refs found!