1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00029529-RA

PSME_00029529-RA


Description : (at1g64390 : 682.0) glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (q5nat0|gun2_orysa : 641.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 1270.0) & (original description: no original description)


Gene families : OG_42_0000077 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029529-RA
Cluster HCCA clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_05097 No alias endoglucanase 11 0.03 Orthogroups_2024-Update
At1g71380 No alias Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q0V7W1] 0.03 Orthogroups_2024-Update
At2g32990 No alias Endoglucanase 11 [Source:UniProtKB/Swiss-Prot;Acc:O48766] 0.03 Orthogroups_2024-Update
At4g11050 No alias Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0] 0.03 Orthogroups_2024-Update
At4g38990 No alias Endoglucanase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVJ4] 0.02 Orthogroups_2024-Update
Brara.I01325.1 No alias class-C endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Brara.I03254.1 No alias class-B endo-1,4-beta-glucanase 0.02 Orthogroups_2024-Update
Glyma.06G025100 No alias glycosyl hydrolase 9B7 0.03 Orthogroups_2024-Update
Glyma.06G056700 No alias glycosyl hydrolase 9A4 0.03 Orthogroups_2024-Update
Glyma.14G019900 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
HORVU2Hr1G120100.1 No alias class-C endo-1,4-beta-glucanase 0.03 Orthogroups_2024-Update
HORVU5Hr1G081200.5 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g12030 No alias endoglucanase precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g50040 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g32940 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g23084 No alias endoglucanase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10430521g0010 No alias (at3g43860 : 535.0) glycosyl hydrolase 9A4 (GH9A4);... 0.03 Orthogroups_2024-Update
MA_16152g0010 No alias (at4g02290 : 718.0) glycosyl hydrolase 9B13 (GH9B13);... 0.03 Orthogroups_2024-Update
MA_19509g0020 No alias (at1g64390 : 677.0) glycosyl hydrolase 9C2 (GH9C2);... 0.03 Orthogroups_2024-Update
MA_42717g0010 No alias (at4g11050 : 801.0) glycosyl hydrolase 9C3 (GH9C3);... 0.03 Orthogroups_2024-Update
MA_697188g0010 No alias (at4g02290 : 427.0) glycosyl hydrolase 9B13 (GH9B13);... 0.03 Orthogroups_2024-Update
PSME_00006676-RA No alias (at4g02290 : 363.0) glycosyl hydrolase 9B13 (GH9B13);... 0.02 Orthogroups_2024-Update
PSME_00007066-RA No alias (at1g02800 : 663.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
PSME_00008280-RA No alias (at1g02800 : 594.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
Potri.001G092200 No alias glycosyl hydrolase 9C2 0.03 Orthogroups_2024-Update
Potri.001G356000 No alias glycosyl hydrolase 9B8 0.02 Orthogroups_2024-Update
Potri.005G115400 No alias glycosyl hydrolase 9B5 0.02 Orthogroups_2024-Update
Potri.005G237700 No alias glycosyl hydrolase 9B5 0.03 Orthogroups_2024-Update
Potri.014G157600 No alias glycosyl hydrolase 9B8 0.04 Orthogroups_2024-Update
Potri.019G069300 No alias cellulase 3 0.03 Orthogroups_2024-Update
Pp1s100_137V6 No alias endo- -beta- 0.02 Orthogroups_2024-Update
Pp1s100_139V6 No alias endo-beta- -glucanase 0.02 Orthogroups_2024-Update
Pp1s176_127V6 No alias endo-beta- -glucanase 0.01 Orthogroups_2024-Update
Seita.1G086900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G287600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G276600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen05g031080 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update
Sopen08g031400 No alias Glycosyl hydrolase family 9 0.03 Orthogroups_2024-Update
Sopen09g030130 No alias Glycosyl hydrolase family 9 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
MF GO:0030246 carbohydrate binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
InterPro domains Description Start Stop
IPR019028 CBM_49 577 656
IPR001701 Glyco_hydro_9 75 536
No external refs found!