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  5. PSME_00029576-RA

PSME_00029576-RA


Description : (at2g47160 : 1022.0) Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.; REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2632 Blast hits to 1400 proteins in 192 species: Archae - 0; Bacteria - 6; Metazoa - 1971; Fungi - 316; Plants - 233; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink). & (reliability: 2044.0) & (original description: no original description)


Gene families : OG_42_0000732 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000732_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029576-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
A4A49_04653 No alias putative boron transporter 7 0.02 Orthogroups_2024-Update
Brara.A00544.1 No alias borate transporter *(BOR) 0.02 Orthogroups_2024-Update
Glyma.17G088800 No alias HCO3- transporter family 0.02 Orthogroups_2024-Update
Glyma.19G219500 No alias HCO3- transporter family 0.02 Orthogroups_2024-Update
Sopen03g038900 No alias HCO3- transporter family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006820 anion transport IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011531 HCO3_transpt_C 473 563
IPR011531 HCO3_transpt_C 15 191
IPR011531 HCO3_transpt_C 215 386
No external refs found!