1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00029699-RA

PSME_00029699-RA


Description : (at3g22470 : 363.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 333.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 664.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029699-RA
Cluster HCCA clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.04 Orthogroups_2024-Update
PSME_00012031-RA No alias (at3g22470 : 323.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Sobic.006G120200.2 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 85 112
IPR002885 Pentatricopeptide_repeat 56 77
IPR002885 Pentatricopeptide_repeat 574 597
IPR002885 Pentatricopeptide_repeat 355 384
IPR002885 Pentatricopeptide_repeat 115 145
IPR002885 Pentatricopeptide_repeat 461 492
IPR002885 Pentatricopeptide_repeat 289 338
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 222 271
IPR002885 Pentatricopeptide_repeat 499 548
IPR002885 Pentatricopeptide_repeat 394 443
No external refs found!