1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00029748-RA

PSME_00029748-RA


Description : (at5g53470 : 102.0) Encodes an acyl-CoA binding protein that is localized to vesicles,and plasma membrane especially in epidermal cells of heart, torpedo and cotyledon stage embryos, cell wall of the seed coat. Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower.; acyl-CoA binding protein 1 (ACBP1); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 2 (TAIR:AT4G27780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)


Gene families : OG_42_0003633 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003633_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00029748-RA
Cluster HCCA clusters: Cluster_227


Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 127 187
No external refs found!